ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR167
source: PMRD, original name: tae-miR167
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCAAACAAGAAACGCTGCGGCAGCCTCACT mismatches: 3 bulges: 13 |
pre-miRNA
CTGCCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCCGAGTGATCAAACAAGAAACGCTGCGGCAGCCTCACTTCTTCCCGCCGTTGGGCACAA
CTACTTCT
dot-bracket secondary structure
.((((((((((((.((((((.((((((.((((((((...........)))))............))))))))).)))))).)))))....)))))))...
........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
CTGCCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCCGAGTGATCAAACAAGAAACGCTGCGGCAGCCTCACTTCTTCCCGCCGTTGGGCACAA
CTACTTCT
dot-bracket secondary structure
.((((((((((((.((((((.((((((.((((((((...........)))))............))))))))).)))))).)))))....)))))))...
........
SIMILARITIES| miRBase tae-MIR167: 1e-56 PMRD zma-miR167d: 2e-20 microPC miR167: 0.000001 | UniProt no hits RFAM MIR167_1: 3e-17 |
Identical with: tae-MIR167 from miRBase (MNEST042638) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
