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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST054703
species: Triticum aestivum
miRNA family: MIR1128
source: PMRD, original name: tae-miR1128

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACTACTCCCTCCGTCCGAAA

miRNA*
CCGGACGGAGGGAGTAATTGC

mismatches: 4
bulges: 0

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pre-miRNA
ATATGAGAGCATGGGTGAGAGGTGCTTAGTTACTACTCCCTCCGTCCGAAAATACTTGTCATCAAAATGAATAAAAGGGGATGTATCTAGAACTAAAATA
CATCTAGATACATCCCCTTCTATCCATTTTGATGACAACTATTTCCGGACGGAGGGAGTAATTGCTTCTTCTGGCTTGGCGTTTATGT


dot-bracket secondary structure
(((((((.((.(((((.(((((.....(((...(((((((((((((((.(((((.((((((((((((((.(((.(((((((((((((((((.........
..))))))))))))))))).))).)))))))))))))).))))).)))))))))))))))...))).))))).))))))).)))))))



SIMILARITIES
miRBase tae-MIR1128: 8e-99

PMRD ata-miR1122: 0.00000000000001

microPC miR1128: 2e-53
UniProt no hits

RFAM MIR1122: 8e-50

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"




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