ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1128
source: PMRD, original name: tae-miR1128
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTACTCCCTCCGTCCGAAA miRNA* CCGGACGGAGGGAGTAATTGC mismatches: 4 bulges: 0 |
pre-miRNA
ATATGAGAGCATGGGTGAGAGGTGCTTAGTTACTACTCCCTCCGTCCGAAAATACTTGTCATCAAAATGAATAAAAGGGGATGTATCTAGAACTAAAATA
CATCTAGATACATCCCCTTCTATCCATTTTGATGACAACTATTTCCGGACGGAGGGAGTAATTGCTTCTTCTGGCTTGGCGTTTATGT
dot-bracket secondary structure
(((((((.((.(((((.(((((.....(((...(((((((((((((((.(((((.((((((((((((((.(((.(((((((((((((((((.........
..))))))))))))))))).))).)))))))))))))).))))).)))))))))))))))...))).))))).))))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
ATATGAGAGCATGGGTGAGAGGTGCTTAGTTACTACTCCCTCCGTCCGAAAATACTTGTCATCAAAATGAATAAAAGGGGATGTATCTAGAACTAAAATA
CATCTAGATACATCCCCTTCTATCCATTTTGATGACAACTATTTCCGGACGGAGGGAGTAATTGCTTCTTCTGGCTTGGCGTTTATGT
dot-bracket secondary structure
(((((((.((.(((((.(((((.....(((...(((((((((((((((.(((((.((((((((((((((.(((.(((((((((((((((((.........
..))))))))))))))))).))).)))))))))))))).))))).)))))))))))))))...))).))))).))))))).)))))))
SIMILARITIES| miRBase tae-MIR1128: 8e-99 PMRD ata-miR1122: 0.00000000000001 microPC miR1128: 2e-53 | UniProt no hits RFAM MIR1122: 8e-50 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
