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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST054708
species: Triticum aestivum
miRNA family: MIRf341
source: PMRD, original name: tae-miR1133

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATATACTCCCTCCGTCCGAAA

miRNA*
 TCGGATGGAGGGAGTAGTAATT

mismatches: 4
bulges: 0
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pre-miRNA
 ACTTCTTAGTGATAGTGGTCAATTACATCATATACTCCCTCCGTCCGAAAAAGTTTGTCCCAAGCTTGTTCCTCAAATGGATGTATCTAGCACTAACTTG
ATGCTACATACATTCATTTGAGGGACACGCTTTTTCGGATGGAGGGAGTAGTAATTTTGATATACACACTGAAGTTGCTA

dot-bracket secondary structure
(((((...(((.((...(((((((((......((((((((((((((((((((((.((((((...........((((((((((((((.((((((......)
.))))).)))))))))))))))))))).)))))))))))))))))))))))))))..)))).)))))...))))).....


SIMILARITIES
miRBase tae-MIR1133: 2e-99

PMRD ata-miR1122: 0.0006

microPC miR1133: 0.000009		UniProt no hits

RFAM MIR1122: 6e-35

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"



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