ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR1136
source: PMRD, original name: tae-miR1136
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTCGCAGGTATGGATGTATCTA miRNA* AATACATCCATTTCTGCGACGAGT mismatches: 2 bulges: 0 |
pre-miRNA
TACTCCCTCCGTTCCGAATTACTTGTCGCAGGTATGGATGTATCTAGATGTATTTTAGTTCTAAATACATCCATTTCTGCGACGAGTAATTTGAAACGGA
GGGAGTA
dot-bracket secondary structure
(((((((((((((.((((((((((((((((((.((((((((((.((((...........)))).)))))))))).)))))))))))))))))).))))))
)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
TACTCCCTCCGTTCCGAATTACTTGTCGCAGGTATGGATGTATCTAGATGTATTTTAGTTCTAAATACATCCATTTCTGCGACGAGTAATTTGAAACGGA
GGGAGTA
dot-bracket secondary structure
(((((((((((((.((((((((((((((((((.((((((((((.((((...........)))).)))))))))).)))))))))))))))))).))))))
)))))))
SIMILARITIES| miRBase tae-MIR1136: 4e-56 PMRD tae-miR1135: 1e-22 microPC miR1439: 2e-39 | UniProt no hits RFAM MIR1122: 2e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"
