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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST054755
species: Theobroma cacao
miRNA family: MIR172
source: PMRD, original name: tca-miR172

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCCTGATGATGCTGCAG

miRNA*
 GCAGCAGCAGGGTTCT

mismatches: 1
bulges: 3
View larger
pre-miRNA
 AGAATCCTGATGATGCTGCAGTAGAGANCAGTGGCATTGGTGTAACACTGACCTGACCATGCGTTTGCCATGCCCAATCGGGGAGACCTTGCGGAGGACC
TAATTCAACTCGATTCACCATTGCTCTTTCCTCGCTAGGAAAGAATCTAGGATATCCACTATTCCAAAAAATAGGCTGATCTGACGGCCCTACTGGTCCT
TTGAAAGGTGGACCACCCACTGTTGCAGCAGCAGGGTTCT

dot-bracket secondary structure
(((((((((....((((((((.......((((((...((((..........(((((....((((.....))))....)))))...(((((.(((((((((
...........(((...((.....((((((((....)))))))).....))..))).................(((((......))))).....))))))
))).)))))..)))).)))))))))))))).)))))))))


SIMILARITIES
miRBase ghr-MIR172: 0.00005

PMRD gra-miR172b: 1e-36

microPC miR172: 0.0008		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
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