miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Cucumis melo subsp. melo, Eucalyptus globulus, Eucalyptus gunnii, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Limnanthes alba, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Paullinia cupana var. sorbilis, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Trifolium pratense, Tropaeolum majus, Vitis shuttleworthii, Bruguiera gymnorhiza, Cajanus cajan, Carica papaya, Cicer arietinum, Citrus clementina, Glycine max, Arabidopsis thaliana, Vigna unguiculata, Vitis vinifera, Medicago truncatula, Brassica oleracea, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST054797
species: Vitis vinifera
miRNA family: MIR167
source: PMRD, original name: vvi-miR167a

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GGTCATCTTGCAGCTTCAAT

mismatches: 1
bulges: 1
View larger
pre-miRNA
 TTTGAGAGGTTGAAGCTGCCAGCATGATCTGGTGAAACAAACACCATCTCTTTCTTCTCTAACCCCATGTCTGGATTCGTCCACCGATCCATTATTATAG
ACCAGGCCGCCCGTTTCCCATGTAGTGATCGATAATTAGGCTCGGGGTTTTCACTTTTTAGTGGGATCTAATCCTTAGGATGGATGTTTGTATGGGTGGT
ATATATCATGGTGAGGTCTGTTTTCTATTTTAATTCTAACGGGGTTTTGATTTAGCTGAGGGGGTATAATTCATAGCCTAATTCCAAAACCTAACTCCAT
AGAGATAGGGTTCCATGATCAGGTCATCTTGCAGCTTCAATCACTCACTCA

dot-bracket secondary structure
..((((.((((((((((((.((.((((((((((.(.......(((..(((...((..((.((((((.....((((((.(....).)))))).....((((
(((..(((((((((.((((((..(((((((((.........)))).....))))).....))))))....((((.......))))......)))))))))
...(((....))).)))))))...................))))))..))...))..)))..)))........................((((.(((...
.))).))))......).)))))))))))).)))))))))))).))))....


SIMILARITIES
miRBase no hits

PMRD ppl-miR167b: 0.00000000002

microPC miR167: 0.000001		UniProt no hits

RFAM MIR167_1: 0

Identical with: vvi-MIR167a from miRBase (MNEST041591)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record

references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"



Liczniki na strone;