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Species belonging to selected taxon:

Vitis shuttleworthii, Vitis vinifera



ABOUT THIS RECORD

ID: MNEST054801
species: Vitis vinifera
miRNA family: MIR167
source: PMRD, original name: vvi-miR167e

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA

miRNA*
GATCATGTGGCAGTTTCACC

mismatches: 1
bulges: 1

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pre-miRNA
CACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTGCTTCCCTTTGTGAACAGAGATCAGATCATGTGGCAGTTTCACCTGTTGTTGGT

dot-bracket secondary structure
.((((.(((.(((((((((((.((((((((............(((((....)))))...))))))))))))))))))).)))....))))


SIMILARITIES
miRBase vvi-MIR167e: 4e-46

PMRD ptc-miR167g: 0.0000000000003

microPC miR167: 0.000000000005
UniProt no hits

RFAM MIR167_1: 8e-45

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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