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Species belonging to selected taxon:

Vitis shuttleworthii, Vitis vinifera



ABOUT THIS RECORD

ID: MNEST054802
species: Vitis vinifera
miRNA family: MIR168
source: PMRD, original name: vvi-miR168

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGAAT

mismatches: 3
bulges: 0

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pre-miRNA
GGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATTGGTTGCTGAGCGAATTCCGA
TCCCGCCTTGCATCAACTGAATCGGAGACGGC


dot-bracket secondary structure
.(((((..(((((.((((((((((.(((((.(.((.(((((..(((((((...))))))).....((((((((.......)))))))).))))).)).).
))))).)))))))))).)))))..)))))...



SIMILARITIES
miRBase vvi-MIR168: 6e-71

PMRD gma-miR168: 0.000000000002

microPC miR168: 8e-58
UniProt no hits

RFAM MIR168: 1e-69

Identical with: vvi-MIR168 from miRBase (MNEST041596)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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