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Species belonging to selected taxon:

Vitis shuttleworthii, Vitis vinifera



ABOUT THIS RECORD

ID: MNEST054803
species: Vitis vinifera
miRNA family: MIR169
source: PMRD, original name: vvi-miR169a

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGG

miRNA*
GGCAAGTTGTCCTTGGCTACA

mismatches: 3
bulges: 0

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pre-miRNA
GAGAGTGGAATGCAGCCAAGGATGACTTGCCGGAATTTATATATAGTGAGAAGAGAAGAGGCTATATGCTTTCACATATATAGTGAACCCTGGCAAGTTG
TCCTTGGCTACA
TTTGATTCTCTT


dot-bracket secondary structure
((((((.(((((.(((((((((..(((((((((..(((((((((((((((.........(((.....)))))))).))))).)))))..)))))))))..
))))))))).))
))).))))))..



SIMILARITIES
miRBase vvi-MIR169a: 3e-66

PMRD vvi-miR169d: 1e-56

microPC miR169: 0.0001
UniProt no hits

RFAM MIR169_2: 1e-56

Identical with: vvi-MIR169a from miRBase (MNEST041597)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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