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Species belonging to selected taxon:

Vitis shuttleworthii, Vitis vinifera



ABOUT THIS RECORD

ID: MNEST054804
species: Vitis vinifera
miRNA family: MIR169_2
source: PMRD, original name: vvi-miR169b

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGCCAAGGATGGCTTGCCG

miRNA*
GTTAGTCATCCTTGGCTCATT

mismatches: 2
bulges: 0

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pre-miRNA
GGGGTCGAATTGAGCCAAGGATGGCTTGCCGTCATCTGCAGCAAGAGTTGGAGACTTTTAACTGTGCGTGCACGGTTAGTCATCCTTGGCTCATTTGGCC
CTTCT


dot-bracket secondary structure
((((((((((.(((((((((((((((.((((((((.(((((.(((((((...)))))))..))))).))).))))).)))))))))))))))))))))))
))...



SIMILARITIES
miRBase vvi-MIR169b: 6e-55

PMRD vvi-miR169l: 0.000000000005

microPC no hits
UniProt no hits

RFAM MIR169_2: 1e-53

Identical with: vvi-MIR169b from miRBase (MNEST041598)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
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references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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