ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR169_2
source: PMRD, original name: vvi-miR169d
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGAATGATTTGCCGG miRNA* GGCAAGTTGTCCTTGGCTACA mismatches: 4 bulges: 0 |
pre-miRNA
GAGTGGAATGCAGCCAAGAATGATTTGCCGGAATTTATATATAGTGAGAAGAGAAGAGGCTATAGGCTTTCACATATATAGTGAACCCTGGCAAGTTGTC
CTTGGCTACATTTGATTCTC
dot-bracket secondary structure
((((.(((((.(((((((.(..(((((((((..(((((((((((((((.........(((.....)))))))).))))).)))))..)))))))))..).
))))))).))))).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
GAGTGGAATGCAGCCAAGAATGATTTGCCGGAATTTATATATAGTGAGAAGAGAAGAGGCTATAGGCTTTCACATATATAGTGAACCCTGGCAAGTTGTC
CTTGGCTACATTTGATTCTC
dot-bracket secondary structure
((((.(((((.(((((((.(..(((((((((..(((((((((((((((.........(((.....)))))))).))))).)))))..)))))))))..).
))))))).))))).))))..
SIMILARITIES| miRBase vvi-MIR169d: 8e-64 PMRD vvi-miR169a: 1e-56 microPC no hits | UniProt no hits RFAM MIR169_2: 1e-62 |
Identical with: vvi-MIR169d from miRBase (MNEST041600) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
