ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR169
source: PMRD, original name: vvi-miR169f
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAAGTTGTGTTTGGCTACA mismatches: 6 bulges: 0 |
pre-miRNA
GATATTATGGTGCAGCCAAGGATGACTTGCCGAAAATAATTTGCTCGATCGTTAATGTGCTTCTCCAGTTTCTATTGCAATTTATGCATAGGGCAATATA
TATATCCTTTATAGCTTGTTAATTCAGATATTGACTGAGGAATCAATAATGGGCAAGTTGTGTTTGGCTACATGTTTATCTCAT
dot-bracket secondary structure
((((.((((....(((((((.(..(((((((.........((((((.(((((.....(((................)))....))).)).))))))....
....(((((........((((((......)))))).)))))..........)))))))..).))))))).))))..))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
GATATTATGGTGCAGCCAAGGATGACTTGCCGAAAATAATTTGCTCGATCGTTAATGTGCTTCTCCAGTTTCTATTGCAATTTATGCATAGGGCAATATA
TATATCCTTTATAGCTTGTTAATTCAGATATTGACTGAGGAATCAATAATGGGCAAGTTGTGTTTGGCTACATGTTTATCTCAT
dot-bracket secondary structure
((((.((((....(((((((.(..(((((((.........((((((.(((((.....(((................)))....))).)).))))))....
....(((((........((((((......)))))).)))))..........)))))))..).))))))).))))..))))....
SIMILARITIES| miRBase vvi-MIR169f: 8e-102 PMRD zma-miR169a: 0.00000001 microPC miR169: 0.0001 | UniProt no hits RFAM MIR169_2: 6e-100 |
Identical with: vvi-MIR169f from miRBase (MNEST041602) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
