ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR159
source: PMRD, original name: vvi-miR319f
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGACTGAAGGGAGCTCCC miRNA* GAGCTTCCTTCAGTCCACTCA mismatches: 3 bulges: 0 |
pre-miRNA
AGTGGTTTAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGTTAGGGGTTTGGATTAGCTGCCGACTCATTCATTCAAACACAGTAGAATGGAAATGGAG
TTTACTACTGTGAATGTGTGAATGATGCGGGAGGTAAATTTCATCCTTTTCTTGTCTGTGCTTGGACTGAAGGGAGCTCCCTTCTACTGTTTT
dot-bracket secondary structure
(((((...(((.(((((((((((((((((..((((((..((..((((((..((.(((.((.(((..((((((((.((..((((((((....(((......
))).))))))))..)).))))))))..))).)).))).))..))))))..))..))))))..))))))))))))))))).)))))))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
AGTGGTTTAAGAGAGCTTCCTTCAGTCCACTCATGGATGGGTTAGGGGTTTGGATTAGCTGCCGACTCATTCATTCAAACACAGTAGAATGGAAATGGAG
TTTACTACTGTGAATGTGTGAATGATGCGGGAGGTAAATTTCATCCTTTTCTTGTCTGTGCTTGGACTGAAGGGAGCTCCCTTCTACTGTTTT
dot-bracket secondary structure
(((((...(((.(((((((((((((((((..((((((..((..((((((..((.(((.((.(((..((((((((.((..((((((((....(((......
))).))))))))..)).))))))))..))).)).))).))..))))))..))..))))))..))))))))))))))))).)))))))).....
SIMILARITIES| miRBase vvi-MIR319f: 3e-107 PMRD ptc-miR319c: 1e-48 microPC miR319: 0.0000000002 | UniProt no hits RFAM MIR159: 6e-106 |
Identical with: vvi-MIR319f from miRBase (MNEST041638) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
