ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR396
source: PMRD, original name: vvi-miR396c
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GCTCAGGAAAGTTGTGGAACA mismatches: 1 bulges: 0 |
pre-miRNA
TTCTGTGATCTTCCACAGCTTTCTTGAACTGTTTTGGAAGCCTTCCACTTCCATGCAATGGAGGAGTTCAACCAACAGCTCAGGAAAGTTGTGGAACATT
ACTGAGAG
dot-bracket secondary structure
(((.(((((.(((((((((((((((((.((((((((((..(((.(((...........))))))..)))))..))))).))))))))))))))))).)))
)).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
TTCTGTGATCTTCCACAGCTTTCTTGAACTGTTTTGGAAGCCTTCCACTTCCATGCAATGGAGGAGTTCAACCAACAGCTCAGGAAAGTTGTGGAACATT
ACTGAGAG
dot-bracket secondary structure
(((.(((((.(((((((((((((((((.((((((((((..(((.(((...........))))))..)))))..))))).))))))))))))))))).)))
)).)))..
SIMILARITIES| miRBase vvi-MIR396c: 1e-56 PMRD zma-miR396b: 0.000000005 microPC miR396: 0.00002 | UniProt no hits RFAM MIR396: 7e-55 |
Identical with: vvi-MIR396c from miRBase (MNEST041662) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"
