miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST054972
species: Zea mays
miRNA family: MIR166
source: PMRD, original name: zma-miR166p

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 GGAATGTTGTCTGGCTCGAGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 TTGAGGGGAATGTTGTCTGGCTCGAGGTGCAGAAACATACAGATCTCATCGGTCTAGGTTCTTGTCGATCTCGGACCAGGCTTCATTCCCCTCAA

dot-bracket secondary structure
.(((((((((((..((((((..(((((((((..(((....(((((.....)))))..)))..)))..))))))..))))))..))))))))))).


SIMILARITIES
miRBase zma-MIR166e: 3e-44

PMRD zma-miR166q: 3e-44

microPC miR166: 5e-43		UniProt no hits

RFAM mir-166: 2e-45

Identical with: miR166 from microPC (MNEST046839)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;