ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR167
source: PMRD, original name: zma-miR167p
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGCTGCTGCAGCCTCACT mismatches: 1 bulges: 2 |
pre-miRNA
GAGTGAAGCTGCCAGCATGATCTAGCTCTGAGTGATCACCCGAAAAAGAACAATAGTTCTAGGTGGTCATGCCTTGCTAGGTCATGCTGCTGCAGCCTCA
CTT
dot-bracket secondary structure
((((((.(((((((((((((((((((.....(((((((((......(((((....))))).))))))))).....))))))))))))))..))))).)))
)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGTGAAGCTGCCAGCATGATCTAGCTCTGAGTGATCACCCGAAAAAGAACAATAGTTCTAGGTGGTCATGCCTTGCTAGGTCATGCTGCTGCAGCCTCA
CTT
dot-bracket secondary structure
((((((.(((((((((((((((((((.....(((((((((......(((((....))))).))))))))).....))))))))))))))..))))).)))
)))
SIMILARITIES| miRBase zma-MIR167d: 9e-54 PMRD zma-miR167d: 9e-54 microPC miR167: 0.000001 | UniProt no hits RFAM MIR167_1: 8e-36 |
Identical with: zma-MIR167d from miRBase (MNEST042734) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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