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Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Cynodon dactylon
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST055024
species:
Zea mays
miRNA family:
MIR171
source:
PMRD, original name:
zma-miR170m
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC
miRNA*
TGTTGGCATGGCTCAATCAAC
mismatches:
0
bulges:
0
View larger
pre-miRNA
GCGA
TGTTGGCATGGCTCAATCAAC
TCGCCGGCCGCGGGTGGCTTAGCTTATTAATTCTGCGCGTTCGATCGAGGTGCGGGCGCAGTGTTTAAT
TGATTG
AGCCGTGCCAATATC
dot-bracket secondary structure
..((
(((((((((((((((((((..
..((((.(....).)))).......(((((..((((((..(((((....)).)))))))))...)))))
))))))
)))))))))))))))
SIMILARITIES
miRBase
zma-MIR171f
:
9e-45
PMRD
zma-miR171m
:
1e-59
microPC
miR171
:
9e-45
UniProt
no hits
RFAM
MIR171_1: 2e-52
Identical with:
zma-miR171m
from PMRD (
MNEST055039
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record