ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR171_1
source: PMRD, original name: zma-miR171b
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCAC miRNA* GATATTGGCGCGGTTCAATC mismatches: 1 bulges: 0 |
pre-miRNA
CGGGATATTGGCGCGGTTCAATCAGAAAGCTTGCGCTCCAGGCCCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACG
dot-bracket secondary structure
((.(((((((((((((((((((((((.((...(.(((((........))))).)..)).))))))))))))))))))))))).))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
CGGGATATTGGCGCGGTTCAATCAGAAAGCTTGCGCTCCAGGCCCGAGGGGCTCCACTCTTTGATTGAGCCGTGCCAATATCACG
dot-bracket secondary structure
((.(((((((((((((((((((((((.((...(.(((((........))))).)..)).))))))))))))))))))))))).))
SIMILARITIES| miRBase zma-MIR171b: 4e-43 PMRD sbi-miR171k: 1e-33 microPC miR171: 2e-26 | UniProt no hits RFAM MIR171_1: 3e-32 |
Identical with: zma-MIR171b from miRBase (MNEST042762) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
