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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST055036
species: Zea mays
miRNA family: MIR171
source: PMRD, original name: zma-miR171i

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC

miRNA*
TGTTGGCACGGTTCAATCAAA

mismatches: 0
bulges: 0

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pre-miRNA
CTGGTTGGCTGAGAGAGTGCGATGTTGGCACGGTTCAATCAAATCGCCGGCCGGGTTGACTTGTTGATTGAGCCGTGCCAATATCACAACCTTCTCTAGC
CTAG


dot-bracket secondary structure
......(((((((((..((.((((((((((((((((((((((.(((((.....)).)))....)))))))))))))))))))))).))...))))).)))
)...



SIMILARITIES
miRBase zma-MIR171i: 2e-54

PMRD zma-miR171f: 4e-16

microPC miR171: 0.0000003
UniProt no hits

RFAM MIR171_1: 0.00000000002

Identical with: zma-MIR171i from miRBase (MNEST042769)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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