ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR172
source: PMRD, original name: zma-miR172a
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCA miRNA* TGGCATCATCAAGATTCACA mismatches: 4 bulges: 0 |
pre-miRNA
GCGTGGCATCATCAAGATTCACAACCCATCAATCCGAACCACTGATTTGGAATGCATGYATGAGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
..(..(((((((((((((((.((...(((((.((((((.......)))))).)).)))..)).)))))))))))))))..)..
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
GCGTGGCATCATCAAGATTCACAACCCATCAATCCGAACCACTGATTTGGAATGCATGYATGAGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
..(..(((((((((((((((.((...(((((.((((((.......)))))).)).)))..)).)))))))))))))))..)..
SIMILARITIES| miRBase zma-MIR172a: 4e-41 PMRD ath-miRf11051-akr: 0.0000002 microPC miR172: 0.0000007 | UniProt no hits RFAM mir-172: 0.0000000008 |
Identical with: zma-MIR172a from miRBase (MNEST042775) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
