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Species belonging to selected taxon:
Cynodon dactylon
,
Eragrostis curvula
,
Panicum virgatum
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Cenchrus ciliaris
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST055046
species:
Zea mays
miRNA family:
MIR172
source:
PMRD, original name:
zma-miR172m
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGAATCCTGATGATGCTGCAG
miRNA*
GGAAACAGAATCAAAGTTCCTAACAGCATCCGGTCCA
mismatches:
8
bulges:
2
View larger
pre-miRNA
AGAATCCTGATGATGCTGCAG
TGGTGGCAGGGAGAACTGGGGCACGGGAGCCCTGCGTTTGCCATGCCCAGGAGGGGAACGGCTGGGGACACGCCGGCTC
GGACCGGTTCTCCTCTTCCTGCATAGGCGCCTCCCTGAGGTTCACAAAGAAGCCTGGACAAGGAGATGCATACAGATGTGGATGCTGGGGCCGCATCGAT
CTGCTGTGAGGATGGACAGGCCACTGGGGGCCCATTGGCTGAGAAACAATGGAGCTTGAAGCTTCAGGAGAATTACAACTTAATCCAAAACCAGTCAGGG
TACCATCACTTCTGAGATCATGCACGTTAGGTTGTGAAATCCTCAAATTCAGATCAAGGATGTCTCCATCAACCACATCTTTCTCAATTGCAGGTGGAAG
TGGGACATCTCCATCATA
GGAAACAGAATCAAAGTTCCTAACAGCATCCGGTCCA
dot-bracket secondary structure
......(((..(((((((..(
(((((((((((((....(((((......)))))......(((((((..((((((((((((((((((..(.....).)))
)).)).)))))))))))...)))).)))..)))))))..((((.((.....(((((.(....((((.......((((((((.((.(((((..((((((((
(((...(((((((.....(((((.(((....))).))))).........((((((.....))))))......((((((((((((..........((((((
(......)).)))))..........)))))))))))).)))))))....))))))...)))))))))).)).)))))))).))))...).))))).....
))))))....)))))))(
((((............)))))..))))))))))....
SIMILARITIES
miRBase
ghr-MIR172
:
0.000006
PMRD
tca-miR172
:
0.00009
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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