miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST055055
species: Zea mays
miRNA family: MIR390
source: PMRD, original name: zma-miR390

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AAGCTCAGGAGGGATAGCGCC

miRNA*
 CGCTATCTATCCTGAGCTC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 AAGCTCAGGAGGGATAGCGCCTAGGAAAACACATAGATCGGAGCCGGCCGCGAGGAGAAAGAAAGAGCCAAGAGATATGTGTGATGAATAATCTACATGG
ATCTTGGCTAGCTTTTGTGTTCTCCTCTGGAGGCGTGGTTCTGTCTATCAATCTGAAGCGCTATCTATCCTGAGCTC

dot-bracket secondary structure
.(((((((((.(((((((((...(((......(((((.(((((((((((..((((((((.(((((((((((((..((((((.(((.....))))))))).
.))))))))..)))))...))))))))....))).)))))))))))))...)))...))))))))).))))))))).


SIMILARITIES
miRBase zma-MIR390a: 1e-97

PMRD osa-miR390: 0.00004

microPC miR390: 0.00004		UniProt no hits

RFAM MIR390: 0.0006

Identical with: zma-MIR390a from miRBase (MNEST042784)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;