ABOUT THIS RECORDspecies: Zea mays
miRNA family: MIR395
source: PMRD, original name: zma-miR395c
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGAAGTGTTTGGAGGAACTC miRNA* GTTCCCTGCAAACACTTCACCA mismatches: 1 bulges: 1 |
pre-miRNA
TCTTGGTTGGTTCTCCCTTGGAGTTCCCTGCAAACACTTCACCAGCTAGGCCATAGTGCCGGCCCTTGCACAATGTTGTATCTGATCACCTAGCTAGTGT
GAAGTGTTTGGAGGAACTCTAGGTGTTATCCAGCAATG
dot-bracket secondary structure
.....(((((....(.(((((((((((.(.((((((((((((((((((((.(((.((((........)))).))).............))))))).).))
)))))))))).)))))))))))).)....)))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TCTTGGTTGGTTCTCCCTTGGAGTTCCCTGCAAACACTTCACCAGCTAGGCCATAGTGCCGGCCCTTGCACAATGTTGTATCTGATCACCTAGCTAGTGT
GAAGTGTTTGGAGGAACTCTAGGTGTTATCCAGCAATG
dot-bracket secondary structure
.....(((((....(.(((((((((((.(.((((((((((((((((((((.(((.((((........)))).))).............))))))).).))
)))))))))).)))))))))))).)....)))))....
SIMILARITIES| miRBase zma-MIR395c: 2e-74 PMRD zma-miR395e: 5e-16 microPC no hits | UniProt no hits RFAM mir-395: 0.00000000000003 |
Identical with: zma-MIR395c from miRBase (MNEST042793) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D, PLoS Genet. 5:e1000716(2009)., "A genome-wide characterization of microRNA genes in maize"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
