ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCTTCATCATCATCATCT miRNA* ATGCGATAATGATAAGTGATG mismatches: 4 bulges: 2 |
pre-miRNA
AATGCTGTGACAGATGCGATAATGATAAGTGATGATGAAAATGATAATAATCCACCTATTGAGAGTAACATAAGCTCTCATCGGTCTGGTGATAGAAACC
AAGNAGNAGAAGGCAGGNACAGAGGAAACTCAGCGACTGAGAACCGAGCTTCGGGAGAAACCTTTACTCCGGTATCTGCTAATCATCCACCGCCTTTTTC
TCCTTCATCGTCATCTTCATCATCATCATCTTCAGACGGCG
dot-bracket secondary structure
...(((((((.(((((.(((.((((...(((((((((((...(((....))).(((...(((((((.......)))))))..))).((((.......)))
).(.((.(((((((.((....((.((..(((((...)))))..((((...)))).(((.(((........))).))).....)).))..))))))))).)
).))))))))))))..)))).)))..)))))))..))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
degradome data
download this record
AATGCTGTGACAGATGCGATAATGATAAGTGATGATGAAAATGATAATAATCCACCTATTGAGAGTAACATAAGCTCTCATCGGTCTGGTGATAGAAACC
AAGNAGNAGAAGGCAGGNACAGAGGAAACTCAGCGACTGAGAACCGAGCTTCGGGAGAAACCTTTACTCCGGTATCTGCTAATCATCCACCGCCTTTTTC
TCCTTCATCGTCATCTTCATCATCATCATCTTCAGACGGCG
dot-bracket secondary structure
...(((((((.(((((.(((.((((...(((((((((((...(((....))).(((...(((((((.......)))))))..))).((((.......)))
).(.((.(((((((.((....((.((..(((((...)))))..((((...)))).(((.(((........))).))).....)).))..))))))))).)
).))))))))))))..)))).)))..)))))))..))))).
SIMILARITIES| miRBase ath-MIR414: 0.00005 PMRD ath-miR414: 0.00005 microPC no hits | UniProt no hits RFAM mir-598: 0.0000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
degradome data
download this record
