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Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha



ABOUT THIS RECORD

ID: MNEST055435
species: Actinidia deliciosa
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Actinidia deliciosa Actinidia Actinidiaceae Ericales asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATCCTGATGATGCTGCAG

miRNA*
 GCAGCTTTATCATAAGCCCC

mismatches: 5
bulges: 1
View larger
pre-miRNA
 GGTTATGATCTTCTGCTGTGGGAATCCTGATGATGCTGCAGCACTTGCAAACACTTGGCCGGGAGGAGGATTAACGATATTGAGTTGCCAATTTTGATGC
TCACTTGTAGAGAGTGACAGCTTTCCCCCATTAACATTAGTACTGCTGCTTGGACACTGAACCTTGGGCTGAAATTCGCGGTTACGCCAATCAGTTACTT
CAATAGGCATAGAAGTATGGCGCTGATCATCTGCAATGTCGTGGCTCTTCTGTTTCGAGGCTGAGCTGCCCAAGCTCAAATCCAAATTATGGTCTGATGG
CTTGCCTGAACATTCAGTGGAATTGAGTTCATCTTCATAGATGCTGGGATCAAAGTTGGTCACAGCTTCCTTGCCATTACACTTGATTGCAGCTTTATCA
TAAGCCCCTGGCAGCTTCAAT

dot-bracket secondary structure
.....(((....((((((.(((.....((((((.(((((((......(((.....((((.((((((....((((.....))))((.((((((((((((.(
(((.(((((((((((..((((((...........((.((((...))))..)).............))))))..))))..((((((((((......(((((
(..........))))))))))).))))).)))))))((..(((((((.(((......)))..))))))).)).((((((.((((....(((.((....((
....)).)).)))....)))).)))))).(((((....))))).)))))))))))))))).))..)))))).))))......))).))))))).))))))
....))).))))))..)))..


SIMILARITIES
miRBase vvi-MIR172c: 0.00009

PMRD ath-miR172m: 0.000001

microPC no hits		UniProt sp|P47927|AP2_ARATH: 3e-19

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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