ABOUT THIS RECORDspecies: Elaeis guineensis
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
GATGCTGTTGACAGAAGATAGAGAGCACAGATGATGACATGCAAGACCCATTGCATCTCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACCTT
dot-bracket secondary structure
.....((.(((((((((((((((((((((((.(((((.((((((......)))))).))).)).)))))))))))))).))))))))).))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATGCTGTTGACAGAAGATAGAGAGCACAGATGATGACATGCAAGACCCATTGCATCTCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACCTT
dot-bracket secondary structure
.....((.(((((((((((((((((((((((.(((((.((((((......)))))).))).)).)))))))))))))).))))))))).))....
SIMILARITIES| miRBase vvi-MIR156i: 4e-28 PMRD vvi-miR156i: 4e-28 microPC miR157: 8e-20 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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