ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIRf950
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCTGCACCCTTCTCGTTA miRNA* GCGTGGAGGGTGTAGCCGTGG mismatches: 3 bulges: 0 |
pre-miRNA
TCACTACTCTGGAACTGTTTGCCCTGAGTTTAAGCGTGGAGGGTGTAGCCGTGGAGAGAATTGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTGCAC
CCTTCTCGTTATCGAACCGAGGCTTGCAAAGATGGCAAGAA
dot-bracket secondary structure
.....((((.((.........))..))))...((((.((((((((((((((..(((((.((((((((....)))))))).)))))......)))))))))
))))).)))).(((...)))..(((((.......)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCACTACTCTGGAACTGTTTGCCCTGAGTTTAAGCGTGGAGGGTGTAGCCGTGGAGAGAATTGTGAGTTTTCTCATGGTGTTTTTGAGTGTTGGCTGCAC
CCTTCTCGTTATCGAACCGAGGCTTGCAAAGATGGCAAGAA
dot-bracket secondary structure
.....((((.((.........))..))))...((((.((((((((((((((..(((((.((((((((....)))))))).)))))......)))))))))
))))).)))).(((...)))..(((((.......)))))..
SIMILARITIES| miRBase no hits PMRD ptc-miRf10824-akr: 1e-53 microPC no hits | UniProt sp|O82307|C3H23_ARATH: 2e-19 RFAM no hits | most similar mature miRNAs |
Identical with: ptc-miRf10824-akr from PMRD (MNEST052646) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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