ABOUT THIS RECORDspecies: Elaeis guineensis
miRNA family: MIRf1372
source: miRNEST
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCGAGCTTCTCGAAGATGTC miRNA* GCTTCGCAAGCTCGCCGG mismatches: 5 bulges: 1 |
pre-miRNA
TCCGAGACAGCGTGCTTCGCAAGCTCGCCGGGAAGGACGAGGCGGACAGAGGTCTGAATCTCCCGGGAGGTAATTGTAGGCTTCTTATTGTAGCGGGCAA
GCTTGGACGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAG
dot-bracket secondary structure
.......(((((..(((((.(((((((((((((.....((..(((((....)))))..))))))(((((((.....((((((((((........))).))
)))))...))))))).)))))))))..)))))....)))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCCGAGACAGCGTGCTTCGCAAGCTCGCCGGGAAGGACGAGGCGGACAGAGGTCTGAATCTCCCGGGAGGTAATTGTAGGCTTCTTATTGTAGCGGGCAA
GCTTGGACGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAG
dot-bracket secondary structure
.......(((((..(((((.(((((((((((((.....((..(((((....)))))..))))))(((((((.....((((((((((........))).))
)))))...))))))).)))))))))..)))))....)))))......
SIMILARITIES| miRBase no hits PMRD osa-miRf10132-akr: 3e-36 microPC no hits | UniProt sp|Q9SI96|H2B3_ARATH: 4e-19 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
