ABOUT THIS RECORDspecies: Ciona intestinalis
miRNA family: miR-4054
source: miRNEST
Taxonomy by NCBI:
Ciona intestinalis Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCTTTTGACCATCTTTCTG miRNA* ATGATTGATGTTTAATGGCTCT mismatches: 5 bulges: 0 |
pre-miRNA
GACAACTTACCGTTTGACGGCTATGATTGATGTTTAATGGCTCTTAACAAAAAGGTAGAGCTTTTGACCATCTTTCTGCCATCGCCCTGGTACTTTCA
dot-bracket secondary structure
.......(((((..(((.(((...((..((((.((((.((((((..((......)))))))).)))).))))..)).))).)))...)))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GACAACTTACCGTTTGACGGCTATGATTGATGTTTAATGGCTCTTAACAAAAAGGTAGAGCTTTTGACCATCTTTCTGCCATCGCCCTGGTACTTTCA
dot-bracket secondary structure
.......(((((..(((.(((...((..((((.((((.((((((..((......)))))))).)))).))))..)).))).)))...)))))......
SIMILARITIES| miRBase cin-mir-4054: 6e-24 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
