ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: miR-2305
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGGGGGGGCGGGGAGGGGGG miRNA* CGGCCTCCGGGCCTCCACCCAGC mismatches: 4 bulges: 2 |
pre-miRNA
ATTCATTGCAAAGGGGGGGGCGGGGAGGGGGGGACTCAGTTGCAGTAGTTCTCCAGTTGGTAGAGGGAGCAAATGCTGGTGCAGCACTGATCCACAATGC
CACGCTTTTTGCCGGGCAACCTCCAGTGCCAAGGTCTGAAGATCCCCGGCCTCCGGGCCTCCACCCAGCTCCAGTTG
dot-bracket secondary structure
.......((...(((((((((..(((((.(((((.((((.((((.((((.((((..(.....)..)))).....)))).))))((((((........(((
(..((.....))..)))).....))))))......))))...)))))..)))))..)))))).))).))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATTCATTGCAAAGGGGGGGGCGGGGAGGGGGGGACTCAGTTGCAGTAGTTCTCCAGTTGGTAGAGGGAGCAAATGCTGGTGCAGCACTGATCCACAATGC
CACGCTTTTTGCCGGGCAACCTCCAGTGCCAAGGTCTGAAGATCCCCGGCCTCCGGGCCTCCACCCAGCTCCAGTTG
dot-bracket secondary structure
.......((...(((((((((..(((((.(((((.((((.((((.((((.((((..(.....)..)))).....)))).))))((((((........(((
(..((.....))..)))).....))))))......))))...)))))..)))))..)))))).))).))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P01322|INS1_RAT: 1e-16 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
