ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-28
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGAGGAGCTCACAGTCTAGA miRNA* AGGGCTGGGCCCCTCGTGC mismatches: 2 bulges: 2 |
pre-miRNA
GGTCCCTGCCCACGAGGAGCTCACAGTCTAGAGGGAGGCAACACAGTACACAGTGGGCTGCAGCTACACCTGCCAGAGTGGTTAGAGTCAGAAGCAAGAC
ACCAAGTGCTGTGGGGCCATGGAATAGCATAGGGCTGCTTCTGCTCACAACACAAAGAGACTCAGGGCTGGGCCCCTCGTGCC
dot-bracket secondary structure
(((....)))(((((((.(((..((((((.(((...(((..((((((((...(((.(((...(((......((((...))))...)))....)))....)
))...))))))))..)))..((((((((.....)))).)))).(((..........))).))).))))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGTCCCTGCCCACGAGGAGCTCACAGTCTAGAGGGAGGCAACACAGTACACAGTGGGCTGCAGCTACACCTGCCAGAGTGGTTAGAGTCAGAAGCAAGAC
ACCAAGTGCTGTGGGGCCATGGAATAGCATAGGGCTGCTTCTGCTCACAACACAAAGAGACTCAGGGCTGGGCCCCTCGTGCC
dot-bracket secondary structure
(((....)))(((((((.(((..((((((.(((...(((..((((((((...(((.(((...(((......((((...))))...)))....)))....)
))...))))))))..)))..((((((((.....)))).)))).(((..........))).))).))))))))).)))))))..
SIMILARITIES| miRBase hsa-mir-151b: 0.000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-28: 0.000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
