miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Mus musculus, Sus scrofa, Bos taurus, Rattus norvegicus, Xenopus laevis, Gallus gallus, Canis lupus familiaris, Ovis aries, Macaca fascicularis, Anolis carolinensis, Trichosurus vulpecula, Papio anubis, Homo sapiens, Taeniopygia guttata, Peromyscus maniculatus bairdii, Pongo abelii, Ursus americanus, Equus caballus, Oryctolagus cuniculus, Macaca nemestrina, Rana catesbeiana, Cynops pyrrhogaster, Ambystoma tigrinum tigrinum, Cavia porcellus, Bos indicus, Meleagris gallopavo, Lonchura striata domestica, Bos sp., Macropus eugenii, Peromyscus polionotus subgriseus, Capra hircus, Pan troglodytes verus, Macaca mulatta

ABOUT THIS RECORD

ID: MNEST005693
species: Rattus norvegicus
miRNA family: mir-28
source: miRNEST

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ACGAGGAGCTCACAGTCTAGA

miRNA*
AGGGCTGGGCCCCTCGTGC

mismatches: 2
bulges: 2

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pre-miRNA
GGTCCCTGCCCACGAGGAGCTCACAGTCTAGAGGGAGGCAACACAGTACACAGTGGGCTGCAGCTACACCTGCCAGAGTGGTTAGAGTCAGAAGCAAGAC
ACCAAGTGCTGTGGGGCCATGGAATAGCATAGGGCTGCTTCTGCTCACAACACAAAGAGACTCAGGGCTGGGCCCCTCGTGCC

dot-bracket secondary structure
(((....)))(((((((.(((..((((((.(((...(((..((((((((...(((.(((...(((......((((...))))...)))....)))....)
))...))))))))..)))..((((((((.....)))).)))).(((..........))).))).))))))))).)))))))..

SIMILARITIES

miRBase hsa-mir-151b: 0.000002

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-28: 0.000000003

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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