miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000574
species: Eucalyptus globulus
miRNA family: miR167h
source: miRNEST

Taxonomy by NCBI:
Eucalyptus globulus Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GATCATGTGGCAGCTTCACCT

miRNA*
 ATGAAGCTGCCAGCGTGATCTC

mismatches: 1
bulges: 1
View larger
pre-miRNA
 ACATCGCGCACCACTATCAGATGAAGCTGCCAGCGTGATCTCAACTTTTCTGGTCTCTTAAAGGAAAGATCAGATCATGTGGCAGCTTCACCTGTTGCTGG
GAGCTCGA

dot-bracket secondary structure
)..(((.((.(((.((.(((.(((((((((((.((((((((...(((((((..........)))))))...))))))))))))))))))).))).)).)))
..)).)))


SIMILARITIES
miRBase csi-MIR167b: 1.0E-12

PMRD vvi-miR167c: 3.0E-10

microPC miR167: 2.0E-33		UniProt no hits

RFAM 1MIR167_1: 1.0E-10		most similar mature miRNAs

Identical with: miR167 from microPC (MNEST045268)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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