miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000576
species: Eucalyptus gunnii
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Eucalyptus gunnii Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTTTCAGGTCACCCCTT

miRNA*
 TGGGTGATCTTGGTAACACAGG

mismatches: 2
bulges: 1
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pre-miRNA
 TTAGAAAGGGAGGCATCTCCGATGGGTGATCTTGGTAACACAGGCGCTGTTCCTTTGCGTGTATTCGTATTTGTCCATATGATTCGTGCTATTACATCAG
CGCCTGTGTTTTCAGGTCACCCCTTTGAGATGATCACATTCTTT

dot-bracket secondary structure
..((((...((..((((((.((.((((((.(((((.(((((((((((((.......(((((...((((((......))))))..)))))........)))
)))))))))).))))))))))).)).)))))).))...))))..


SIMILARITIES
miRBase mtr-MIR398a: 0.0001

PMRD gma-miR398b: 0.0001

microPC miR398: 3e-54		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST046008)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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