ABOUT THIS RECORDspecies: Rattus norvegicus
miRNA family: mir-133
source: miRNEST
Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCTGGTTGAAGGGGACCAA miRNA* GGTTCCATTTTACCAGCTTCA mismatches: 3 bulges: 0 |
pre-miRNA
TGGGCGGCGCGGCGTGATCAATGCACAGCTACAGCTGGTTGAAGGGGACCAAATCCATCCAACAGCTGATTTGGTTCCATTTTACCAGCTTCAGCAAAGC
ATTTGGCTTCTGATCCACTGG
dot-bracket secondary structure
((((.(((...((((.....))))...)))..(((((((.(((.(((((((((((............))))))))))).))).)))))))((((..((((
.....))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGGCGGCGCGGCGTGATCAATGCACAGCTACAGCTGGTTGAAGGGGACCAAATCCATCCAACAGCTGATTTGGTTCCATTTTACCAGCTTCAGCAAAGC
ATTTGGCTTCTGATCCACTGG
dot-bracket secondary structure
((((.(((...((((.....))))...)))..(((((((.(((.(((((((((((............))))))))))).))).)))))))((((..((((
.....))))))))))))....
SIMILARITIES| miRBase mmu-mir-133a-2: 3e-51 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 1e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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