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Species belonging to selected taxon:

Mus musculus, Rattus norvegicus



ABOUT THIS RECORD

ID: MNEST005779
species: Rattus norvegicus
miRNA family: mir-133
source: miRNEST

Taxonomy by NCBI:
Rattus norvegicus Rattus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCTGGTTGAAGGGGACCAA

miRNA*
GGTTCCATTTTACCAGCTTCA

mismatches: 3
bulges: 0

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pre-miRNA
TGGGCGGCGCGGCGTGATCAATGCACAGCTACAGCTGGTTGAAGGGGACCAAATCCATCCAACAGCTGATTTGGTTCCATTTTACCAGCTTCAGCAAAGC
ATTTGGCTTCTGATCCACTGG


dot-bracket secondary structure
((((.(((...((((.....))))...)))..(((((((.(((.(((((((((((............))))))))))).))).)))))))((((..((((
.....))))))))))))....



SIMILARITIES
miRBase mmu-mir-133a-2: 3e-51

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-133: 1e-28
most similar mature miRNAs

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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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