miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST005819
species: Triticum aestivum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TATATACTTCCTCCGTCCGGA

miRNA*
 CGGACGGAGGGAGTATATAAT

mismatches: 0
bulges: 0
View larger
pre-miRNA
 GACTCATCTGATATATACTTCCTCCGTCCGGAAATACTTGTCATCAAACTGGATAAAAGGAGATGTATCTAGATGTATTTTAGTTCTAAATACCTCTCTT
TTTATCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTATATAATAAAAGGGG

dot-bracket secondary structure
..(((...((.(((((((((((((((((((((((((((((((((((((.((((((((((((((.((((.((((...((....)))))).)))).))))))
)))))))).))))))))))))))))))))))))))))))))))))).))...))).


SIMILARITIES
miRBase tae-MIR1128: 5e-41

PMRD tae-miR1128: 5e-44

microPC miR1128: 8e-49		UniProt no hits

RFAM MIR1122: 6e-50		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record




Liczniki na strone;