ABOUT THIS RECORDspecies: Triticum aestivum
miRNA family: MIR2012
source: miRNEST
Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACGAGGATGTGCAACTG miRNA* GCTGCACATCCATGCCCAAGC mismatches: 3 bulges: 0 |
pre-miRNA
GAACTCATTTACGTACGATCCTAGCTAGAGCTTGGACGAGGATGTGCAACTGCGGTACGGTAGGACCTTCAGCTACGACCGGCAGCTGCACATCCATGCC
CAAGCTCTACCTACTGTCGTCACTACTGTAGC
dot-bracket secondary structure
............(((((((..(((.((((((((((.((.(((((((((.(((((((...((((.........)))).))).)))).))))))))).)).)
))))))))).)))..))))).)).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAACTCATTTACGTACGATCCTAGCTAGAGCTTGGACGAGGATGTGCAACTGCGGTACGGTAGGACCTTCAGCTACGACCGGCAGCTGCACATCCATGCC
CAAGCTCTACCTACTGTCGTCACTACTGTAGC
dot-bracket secondary structure
............(((((((..(((.((((((((((.((.(((((((((.(((((((...((((.........)))).))).)))).))))))))).)).)
))))))))).)))..))))).)).........
SIMILARITIES| miRBase no hits PMRD tae-miR2012: 4e-47 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: tae-miR2012 from PMRD (MNEST054728) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
