ABOUT THIS RECORDspecies: Euphorbia esula
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Euphorbia esula Euphorbia Euphorbieae Euphorbioideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
TTTTTTTGAAGGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGGAGATTTTTTGTTCTGAACTGCAATAAACACATGAATCGATCGATAAAC
CTCTGCATCCAGCGCTTATCCTCCTTTTTTG
dot-bracket secondary structure
.......(((((..(((.(((((((.((((.((((.(((((((..(((.((....(((.((((........)))).)))..)).)))..))))))).)))
).)))).)))))))))).....)))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTTTTGAAGGTGAAGTCGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGGAGATTTTTTGTTCTGAACTGCAATAAACACATGAATCGATCGATAAAC
CTCTGCATCCAGCGCTTATCCTCCTTTTTTG
dot-bracket secondary structure
.......(((((..(((.(((((((.((((.((((.(((((((..(((.((....(((.((((........)))).)))..)).)))..))))))).)))
).)))).)))))))))).....)))))....
SIMILARITIES| miRBase rco-MIR162: 3e-20 PMRD rco-miR162: 7e-18 microPC miR162: 4e-47 | UniProt no hits RFAM MIR162_2: 1e-16 | most similar mature miRNAs |
Identical with: miR162 from microPC (MNEST046549) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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