ABOUT THIS RECORDspecies: Aquilegia formosa x Aquilegia pubescens
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Aquilegia formosa x Aquilegia pubescens Aquilegia Ranunculaceae Ranunculales stem eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGCTCGAGG mismatches: 3 bulges: 0 |
pre-miRNA
TTGGAAGCTTTCTTTTTGAGAGGAATGTTGTCTGGCTCGAGGCCACTAACTTAACAACTCTTAATTGAAACTCTATCTATAACCGGTTAGCAAGTGAAAG
CGCTTGTGCGCGCTGGTGTTTGTTTGTTTGTGTCGTCGGACCAGGCTTCATTCCCCTCAATTACAGTTTCTACT
dot-bracket secondary structure
.((((((((......(((((.((((((..((((((.(((((((.((.(((..(((((........................((((((..(((((((....
)))))))....))))))..))))).))).))))).)))).))))))..)))))).)))))....))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGGAAGCTTTCTTTTTGAGAGGAATGTTGTCTGGCTCGAGGCCACTAACTTAACAACTCTTAATTGAAACTCTATCTATAACCGGTTAGCAAGTGAAAG
CGCTTGTGCGCGCTGGTGTTTGTTTGTTTGTGTCGTCGGACCAGGCTTCATTCCCCTCAATTACAGTTTCTACT
dot-bracket secondary structure
.((((((((......(((((.((((((..((((((.(((((((.((.(((..(((((........................((((((..(((((((....
)))))))....))))))..))))).))).))))).)))).))))))..)))))).)))))....))))))))..
SIMILARITIES| miRBase aqc-MIR166e: 3e-70 PMRD aqc-miR166e: 3e-70 microPC miR166: 0.0000000006 | UniProt no hits RFAM mir-166: 0.00000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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