ABOUT THIS RECORDspecies: Fagus sylvatica
miRNA family: MIR1439
source: miRNEST
Taxonomy by NCBI:
Fagus sylvatica Fagus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGGACAGAGAGAGTATA miRNA* TACTCCCTGTCCCAAAATA mismatches: 2 bulges: 2 |
pre-miRNA
TTGACAATTTGATACTCCCTGTCCCAAAATAGACTGGAGTTTGCAAATGGCATGCATTTTAATGAAACAAAAGAACATAACAATTTTCCAAAGTGCCCAA
AAAGGAAAGCACCCTATCTATTTTGGGACAGAGAGAGTATAATGTTATTT
dot-bracket secondary structure
.(((((.....((((((.(((((((((((((((..((.((((((.....))).(((((((...((((.................)))).)))))))((..
...))..)))..))..)))))))))))))))...))))))..)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGACAATTTGATACTCCCTGTCCCAAAATAGACTGGAGTTTGCAAATGGCATGCATTTTAATGAAACAAAAGAACATAACAATTTTCCAAAGTGCCCAA
AAAGGAAAGCACCCTATCTATTTTGGGACAGAGAGAGTATAATGTTATTT
dot-bracket secondary structure
.(((((.....((((((.(((((((((((((((..((.((((((.....))).(((((((...((((.................)))).)))))))((..
...))..)))..))..)))))))))))))))...))))))..)))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.0005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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