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Species belonging to selected taxon:

Fagus sylvatica, Quercus petraea, Quercus robur



ABOUT THIS RECORD

ID: MNEST000629
species: Fagus sylvatica
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Fagus sylvatica Fagus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTTGGGACAGAGAGAGTATA

miRNA*
TACTCCCTGTCCCAAAATA

mismatches: 2
bulges: 2

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pre-miRNA
TTGACAATTTGATACTCCCTGTCCCAAAATAGACTGGAGTTTGCAAATGGCATGCATTTTAATGAAACAAAAGAACATAACAATTTTCCAAAGTGCCCAA
AAAGGAAAGCACCCTATCTATTTTGGGACAGAGAGAGTATAATGTTATTT


dot-bracket secondary structure
.(((((.....((((((.(((((((((((((((..((.((((((.....))).(((((((...((((.................)))).)))))))((..
...))..)))..))..)))))))))))))))...))))))..)))))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM MIR1122: 0.0005
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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