ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIRf16
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGAGCTCATGGTCGAGTGTT miRNA* TTCTTACCATTAGCTCTGAT mismatches: 4 bulges: 1 |
pre-miRNA
ATCTGTACTAGATTCTTACCATTAGCTCTGATCCTAATTCACGATCGCGTTGCCTATGTTCGGCAGGCTGCGGTTCAGTCTATCGGATGGCTATTGCGAA
TGGTGCAAGGACCAGCTCCGGGTGCGTTCGACGAGCTCATGGTCGAGTGTTTAAATCTAT
dot-bracket secondary structure
........(((((.((((((((.((((((((.......)))...(((((..(((...((((((.((((((.....)))))).)))))))))...))))).
(((.(((.(((.....)))...)))..)))..))))).))))).))).))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCTGTACTAGATTCTTACCATTAGCTCTGATCCTAATTCACGATCGCGTTGCCTATGTTCGGCAGGCTGCGGTTCAGTCTATCGGATGGCTATTGCGAA
TGGTGCAAGGACCAGCTCCGGGTGCGTTCGACGAGCTCATGGTCGAGTGTTTAAATCTAT
dot-bracket secondary structure
........(((((.((((((((.((((((((.......)))...(((((..(((...((((((.((((((.....)))))).)))))))))...))))).
(((.(((.(((.....)))...)))..)))..))))).))))).))).))))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
