miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST006498
species: Triticum aestivum
miRNA family: MIR1436
source: miRNEST

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTATTTTGGGACGGAGGGAGT

miRNA*
 TCCCTCCGTCCAAAAATTTAT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CAAACAATGTGCTCCCTCCGTCCAAAAATTTATGTCTCAACTTTGGTACAACTTTGTACTAGAGTTAGTACAAAGTTGAGACACTTATTTTGGGACGGAG
GGAGTATAAGATAA

dot-bracket secondary structure
.......((((((((((((((((.(((((...(((((((((((((.((((((((((...))))))).))))))))))))))))...))))).))))))))
))))))))......


SIMILARITIES
miRBase tae-MIR1137: 0.0000000004

PMRD hpr-miR1120: 0.0000000000004

microPC miR1439: 6e-18		UniProt no hits

RFAM MIR1122: 2e-24		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record




Liczniki na strone;