ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCATCCCTAAAAT miRNA* TTTATGGGACTGAGGGAGTGCT mismatches: 3 bulges: 1 |
pre-miRNA
TGCACAATTCATACTCCCTCCATCCCTAAAATGATGTCAAAGATTTGTCTAAATTCAAATGTATTTATACACTAAACGTACATCCAAATTTAGATGTATA
TTCTGACATATTTTTATGGGACTGAGGGAGTGCTATTAGTGA
dot-bracket secondary structure
..((((((...(((((((((..(((((((((..((((((..(((.((((((((((...((((((.............))))))...))))))))))...)
)).))))))..))))).))))..)))))))))..))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCACAATTCATACTCCCTCCATCCCTAAAATGATGTCAAAGATTTGTCTAAATTCAAATGTATTTATACACTAAACGTACATCCAAATTTAGATGTATA
TTCTGACATATTTTTATGGGACTGAGGGAGTGCTATTAGTGA
dot-bracket secondary structure
..((((((...(((((((((..(((((((((..((((((..(((.((((((((((...((((((.............))))))...))))))))))...)
)).))))))..))))).))))..)))))))))..))).))).
SIMILARITIES| miRBase no hits PMRD hpi-miR1122: 0.0004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
