miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000657
species: Festuca arundinacea
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGATTGAGCCGTGCCAATATC

miRNA*
 TGTTGGCATGGTTCAATCAAC

mismatches: 0
bulges: 0
View larger
pre-miRNA
 TACTGGCTTGGAGAGTGCGATGTTGGCATGGTTCAATCAACAATCGAGTGGTCTCTGCATAGCTTCCTTGCTAGCGTGGTGGCATGCTGCTTTGCTTGAT
CTGATTGAGCCGTGCCAATATCGCAAGCTTCCTGCCTAG

dot-bracket secondary structure
....(((..((((..((((((((((((((((((((((((...(((((((((.....((((.(((.((.((....)).)).)))))))....)))))))))
.))))))))))))))))))))))))...)))).)))...


SIMILARITIES
miRBase far-MIR171: 6e-68

PMRD osa-miR171f: 0.0000000001

microPC miR171: 3e-54		UniProt no hits

RFAM MIR171_1: 0.000000002		most similar mature miRNAs

Identical with: miR171 from microPC (MNEST044910)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;