ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: miR-427
source: miRNEST
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAAAGTGCTTCCTGTTTTGGC miRNA* CAAAACTAAGCTCTCTCTT mismatches: 4 bulges: 2 |
pre-miRNA
AGCTGACCAATTTGATATCACCCAAAACTAAGCTCTCTCTTGTGTTCTCTTGATGGTCAGAAAGTGCTTCCTGTTTTGGCCGTTATCGATTGGAGAATT
dot-bracket secondary structure
......((((((.((((....(((((((.((((.((.(((..((((.....))))...))).)).))))...)))))))....))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCTGACCAATTTGATATCACCCAAAACTAAGCTCTCTCTTGTGTTCTCTTGATGGTCAGAAAGTGCTTCCTGTTTTGGCCGTTATCGATTGGAGAATT
dot-bracket secondary structure
......((((((.((((....(((((((.((((.((.(((..((((.....))))...))).)).))))...)))))))....))))))))))......
SIMILARITIES| miRBase xtr-mir-427-1: 0.0003 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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