ABOUT THIS RECORDspecies: Xenopus laevis
miRNA family: miR-216b
source: miRNEST
Taxonomy by NCBI:
Xenopus laevis Xenopus Xenopus Xenopodinae Pipidae Pipoidea Mesobatrachia Anura Batrachia Amphibia Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTATTACCTGTAGAGATTCT miRNA* CATCTCTACTACATAGTCC mismatches: 4 bulges: 2 |
pre-miRNA
TACAGCATCTCTACTACATAGTCCTAGAACAATGCCAGTCAGGGTTACAAATAAAGGAATTGATTGCAAACATAACATGACTTTACAGAAAATATACAGT
ATATTTAATAATGGGAGATGTATANACATATTGCTGCCCAATATGAACTTTGACGGGGAGTGATCATAACTATTACCTGTAGAGATTCTGT
dot-bracket secondary structure
.((((.((((((((...(((((....((.((...((.(((((((((.((..(((((....((.(((......)))))...)))))....(((((((...)
))))))..((.((((((..((((....))))..)).)))).)))))))))))))..))..)).))...))))).....)))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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TACAGCATCTCTACTACATAGTCCTAGAACAATGCCAGTCAGGGTTACAAATAAAGGAATTGATTGCAAACATAACATGACTTTACAGAAAATATACAGT
ATATTTAATAATGGGAGATGTATANACATATTGCTGCCCAATATGAACTTTGACGGGGAGTGATCATAACTATTACCTGTAGAGATTCTGT
dot-bracket secondary structure
.((((.((((((((...(((((....((.((...((.(((((((((.((..(((((....((.(((......)))))...)))))....(((((((...)
))))))..((.((((((..((((....))))..)).)))).)))))))))))))..))..)).))...))))).....)))))))).))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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