miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Anoplopoma fimbria, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Sebastes rastrelliger, Solea senegalensis, Thunnus thynnus, Cynoglossus semilaevis

ABOUT THIS RECORD

ID: MNEST006673
species: Oryzias latipes
miRNA family: miR-1895
source: miRNEST

Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
CCCCCGAGGAGGAGGAGGACT

miRNA*
TCCTCCTCCTCTAGCGGTCGGTT

mismatches: 4
bulges: 2

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pre-miRNA
CATAGTTTGCTCTCCTCCTCCTCTAGCGGTCGGTTCAAGCCTGGGATAAATTTGAGGATGCGCCTGCGGAAGCTCTTCTGTTTGGGTTTCCTCCTCAGCG
GTCCCTGCTTGTCCCCCGAGGAGGAGGAGGACTCCTTCACGT

dot-bracket secondary structure
............((((((((((((..(((..((..(((((..(((((....(((((((.((.((.((((((....))))))..))))....)))))))..
))))).))))).)).))).))))))))))))...........

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt sp|Q7Z6J2|GRASP_HUMAN: 0.0000003

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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