ABOUT THIS RECORDspecies: Oryzias latipes
miRNA family: mir-1236
source: miRNEST
Taxonomy by NCBI:
Oryzias latipes Oryzias Oryziinae Adrianichthyidae Adrianichthyoidei Beloniformes Atherinomorpha Smegmamorpha Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCCCTTGTCTCCTCT miRNA* GGGGGATGAGTGGAAGACGGC mismatches: 5 bulges: 0 |
pre-miRNA
AAAACAGGTACCCTCTTCCCCTTGTCTCCTCTGCCTTTGACATTCTGCAGGGTGCTAAAATATTCACAAAACTTGACCTGCGGAATGCCTATCACCTGAT
CAGAATACGGGAGGGGGATGAGTGGAAGACGGCCTTCAACA
dot-bracket secondary structure
.....((((....((((((.((((((((((...(((.((.(((((((((((.........................))))))))))).(((((....)))
.))..)).))).)))))))))).))))))..))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AAAACAGGTACCCTCTTCCCCTTGTCTCCTCTGCCTTTGACATTCTGCAGGGTGCTAAAATATTCACAAAACTTGACCTGCGGAATGCCTATCACCTGAT
CAGAATACGGGAGGGGGATGAGTGGAAGACGGCCTTCAACA
dot-bracket secondary structure
.....((((....((((((.((((((((((...(((.((.(((((((((((.........................))))))))))).(((((....)))
.))..)).))).)))))))))).))))))..))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9UR07|RTF23_SCHPO: 0.000000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
